Trying to find out which of your database tables uses the most disk space is a pain.
However, the SQL below is the answer to your prayers!
SELECT
table_schema as `Database`,
table_name AS `Table`,
round(((data_length + index_length) / 1024 / 1024), 2) `Size in MB`
FROM information_schema.TABLES
ORDER BY (data_length + index_length) DESC;
And if you want to see the size per database, you can run:
SELECT table_schema AS "Database",
ROUND(SUM(data_length + index_length) / 1024 / 1024, 2) AS "Size (MB)"
FROM information_schema.TABLES
GROUP BY table_schema;